Index

A

AdversarialClassifier (class in armed.models.autoencoder_classifier) (class in armed.models.cnn_classifier) Adversary (class in armed.models.mlp_classifiers) armed module, [1] armed.callbacks module, [1] armed.callbacks.aec_callbacks module, [1] armed.callbacks.segmentation module, [1] armed.crossvalidation module, [1] armed.crossvalidation.grouped_cv module, [1] armed.crossvalidation.splitting module, [1] armed.metrics module, [1] armed.misc module, [1]

armed.models module, [1] armed.models.autoencoder_classifier module, [1] armed.models.cnn_classifier module, [1] armed.models.lme module, [1] armed.models.metalearning module, [1] armed.models.mlp_classifiers module, [1] armed.models.random_effects module, [1] armed.settings module, [1] armed.tfutils module, [1] AuxClassifier (class in armed.models.autoencoder_classifier)

B

balanced_accuracy() (in module armed.metrics) BaseAutoencoderClassifier (class in armed.models.autoencoder_classifier)

BaseMLP (class in armed.models.mlp_classifiers) BasicKFoldUtil (class in armed.crossvalidation.splitting) build() (armed.models.autoencoder_classifier.TiedConv2DTranspose method)

C

call() (armed.models.autoencoder_classifier.AdversarialClassifier method) (armed.models.autoencoder_classifier.AuxClassifier method) (armed.models.autoencoder_classifier.BaseAutoencoderClassifier method) (armed.models.autoencoder_classifier.Decoder method) (armed.models.autoencoder_classifier.DomainAdversarialAEC method) (armed.models.autoencoder_classifier.DomainEnhancingAutoencoderClassifier method) (armed.models.autoencoder_classifier.Encoder method) (armed.models.autoencoder_classifier.ImageClassifier method) (armed.models.autoencoder_classifier.LatentClassifier method) (armed.models.autoencoder_classifier.MixedEffectAuxClassifier method) (armed.models.autoencoder_classifier.MixedEffectsAEC method) (armed.models.autoencoder_classifier.RandomEffectDecoder method) (armed.models.autoencoder_classifier.RandomEffectEncoder method) (armed.models.cnn_classifier.AdversarialClassifier method) (armed.models.cnn_classifier.ClusterInputImageClassifier method) (armed.models.cnn_classifier.DomainAdversarialImageClassifier method) (armed.models.cnn_classifier.ImageClassifier method) (armed.models.cnn_classifier.MixedEffectsClassifier method) (armed.models.cnn_classifier.RandomEffectsClassifier method) (armed.models.mlp_classifiers.Adversary method) (armed.models.mlp_classifiers.BaseMLP method) (armed.models.mlp_classifiers.ClusterCovariateMLP method) (armed.models.mlp_classifiers.DomainAdversarialMLP method) (armed.models.mlp_classifiers.MixedEffectsMLP method) (armed.models.mlp_classifiers.MixedEffectsMLPNonlinearSlope method) (armed.models.mlp_classifiers.MLPActivations method) (armed.models.mlp_classifiers.RandomEffectsLinearSlopeIntercept method) (armed.models.random_effects.ClusterScaleBiasBlock method) (armed.models.random_effects.GammaRandomEffects method) (armed.models.random_effects.RandomEffects method)

classification_metrics() (in module armed.metrics) ClusterCovariateMLP (class in armed.models.mlp_classifiers) ClusterInputImageClassifier (class in armed.models.cnn_classifier) ClusterScaleBiasBlock (class in armed.models.random_effects) compile() (armed.models.autoencoder_classifier.DomainAdversarialAEC method) (armed.models.autoencoder_classifier.DomainEnhancingAutoencoderClassifier method) (armed.models.autoencoder_classifier.MixedEffectsAEC method) (armed.models.cnn_classifier.DomainAdversarialImageClassifier method) (armed.models.cnn_classifier.MixedEffectsClassifier method) (armed.models.mlp_classifiers.DomainAdversarialMLP method) (armed.models.mlp_classifiers.MixedEffectsMLP method) compute_image_metrics() (in module armed.callbacks.aec_callbacks) compute_youden_point() (in module armed.metrics) create_folds() (armed.crossvalidation.splitting.BasicKFoldUtil method) (armed.crossvalidation.splitting.NestedKFoldUtil method)

D

Decoder (class in armed.models.autoencoder_classifier) DomainAdversarialAEC (class in armed.models.autoencoder_classifier)

DomainAdversarialImageClassifier (class in armed.models.cnn_classifier) DomainAdversarialMLP (class in armed.models.mlp_classifiers) DomainEnhancingAutoencoderClassifier (class in armed.models.autoencoder_classifier)

E

Encoder (class in armed.models.autoencoder_classifier)

expand_data_path() (in module armed.misc) expand_results_path() (in module armed.misc)

F

fit() (armed.models.lme.LogisticGLM method) (armed.models.lme.MixedLogisticGLM method)

G

GammaRandomEffects (class in armed.models.random_effects) get_config() (armed.models.autoencoder_classifier.AdversarialClassifier method) (armed.models.autoencoder_classifier.AuxClassifier method) (armed.models.autoencoder_classifier.Decoder method) (armed.models.autoencoder_classifier.Encoder method) (armed.models.autoencoder_classifier.ImageClassifier method) (armed.models.autoencoder_classifier.LatentClassifier method) (armed.models.autoencoder_classifier.MixedEffectAuxClassifier method) (armed.models.mlp_classifiers.Adversary method) (armed.models.mlp_classifiers.MLPActivations method) (armed.models.mlp_classifiers.RandomEffectsLinearSlopeIntercept method) (armed.models.random_effects.ClusterScaleBiasBlock method) (armed.models.random_effects.GammaRandomEffects method) (armed.models.random_effects.NamedVariableLayer method)

get_datestamp() (in module armed.misc) get_fold() (armed.crossvalidation.splitting.BasicKFoldUtil method) (armed.crossvalidation.splitting.NestedKFoldUtil method)

I

image_metrics() (in module armed.metrics)

ImageClassifier (class in armed.models.autoencoder_classifier) (class in armed.models.cnn_classifier)

L

LatentClassifier (class in armed.models.autoencoder_classifier)

load_weights_base_aec() (in module armed.models.autoencoder_classifier) LogisticGLM (class in armed.models.lme)

M

make_compute_latents_callback() (in module armed.callbacks.aec_callbacks) make_deterministic_posterior_fn() (in module armed.models.random_effects) make_fixed_prior_fn() (in module armed.models.random_effects) make_gamma_prior_fn() (in module armed.models.random_effects) make_image_metrics_callback() (in module armed.callbacks.aec_callbacks) make_posterior_fn() (in module armed.models.random_effects) make_random_onehot() (in module armed.misc) make_recon_figure_callback() (in module armed.callbacks.aec_callbacks) make_trainable_prior_fn() (in module armed.models.random_effects) metrics (armed.models.autoencoder_classifier.DomainAdversarialAEC property) (armed.models.autoencoder_classifier.DomainEnhancingAutoencoderClassifier property) (armed.models.autoencoder_classifier.MixedEffectsAEC property) (armed.models.cnn_classifier.DomainAdversarialImageClassifier property) (armed.models.cnn_classifier.MixedEffectsClassifier property) (armed.models.mlp_classifiers.DomainAdversarialMLP property) (armed.models.mlp_classifiers.MixedEffectsMLP property) MixedEffectAuxClassifier (class in armed.models.autoencoder_classifier) MixedEffectsAEC (class in armed.models.autoencoder_classifier) MixedEffectsClassifier (class in armed.models.cnn_classifier) MixedEffectsMLP (class in armed.models.mlp_classifiers) MixedEffectsMLPNonlinearSlope (class in armed.models.mlp_classifiers)

MixedLogisticGLM (class in armed.models.lme) mldg() (in module armed.models.metalearning) MLPActivations (class in armed.models.mlp_classifiers) module armed, [1] armed.callbacks, [1] armed.callbacks.aec_callbacks, [1] armed.callbacks.segmentation, [1] armed.crossvalidation, [1] armed.crossvalidation.grouped_cv, [1] armed.crossvalidation.splitting, [1] armed.metrics, [1] armed.misc, [1] armed.models, [1] armed.models.autoencoder_classifier, [1] armed.models.cnn_classifier, [1] armed.models.lme, [1] armed.models.metalearning, [1] armed.models.mlp_classifiers, [1] armed.models.random_effects, [1] armed.settings, [1] armed.tfutils, [1]

N

NamedVariableLayer (class in armed.models.random_effects)

NestedKFoldUtil (class in armed.crossvalidation.splitting)

O

on_epoch_end() (armed.callbacks.segmentation.SaveImagesCallback method) (armed.callbacks.segmentation.SaveMultiModalImagesCallback method)

P

predict() (armed.models.lme.LogisticGLM method) (armed.models.lme.MixedLogisticGLM method)

R

RandomEffectDecoder (class in armed.models.autoencoder_classifier) RandomEffectEncoder (class in armed.models.autoencoder_classifier)

RandomEffects (class in armed.models.random_effects) RandomEffectsClassifier (class in armed.models.cnn_classifier) RandomEffectsLinearSlopeIntercept (class in armed.models.mlp_classifiers)

S

SaveImagesCallback (class in armed.callbacks.segmentation) SaveMultiModalImagesCallback (class in armed.callbacks.segmentation) sensitivity_at_specificity() (in module armed.metrics) set_gpu() (in module armed.tfutils)

single_sample_dice() (in module armed.metrics) specificity_at_sensitivity() (in module armed.metrics) split() (armed.crossvalidation.grouped_cv.StratifiedGroupShuffleSplit method) StratifiedGroupKFold (class in armed.crossvalidation.grouped_cv) StratifiedGroupShuffleSplit (class in armed.crossvalidation.grouped_cv)

T

test_step() (armed.models.autoencoder_classifier.DomainAdversarialAEC method) (armed.models.autoencoder_classifier.DomainEnhancingAutoencoderClassifier method) (armed.models.autoencoder_classifier.MixedEffectsAEC method) (armed.models.cnn_classifier.DomainAdversarialImageClassifier method) (armed.models.cnn_classifier.MixedEffectsClassifier method) (armed.models.mlp_classifiers.DomainAdversarialMLP method) (armed.models.mlp_classifiers.MixedEffectsMLP method) TiedConv2DTranspose (class in armed.models.autoencoder_classifier)

TiedDecoder (class in armed.models.autoencoder_classifier) train_step() (armed.models.autoencoder_classifier.DomainAdversarialAEC method) (armed.models.autoencoder_classifier.DomainEnhancingAutoencoderClassifier method) (armed.models.autoencoder_classifier.MixedEffectsAEC method) (armed.models.cnn_classifier.DomainAdversarialImageClassifier method) (armed.models.cnn_classifier.MixedEffectsClassifier method) (armed.models.mlp_classifiers.DomainAdversarialMLP method) (armed.models.mlp_classifiers.MixedEffectsMLP method)